SNP Profiles of CRU 156 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	GG	CG	CT	CT	AA	CT	GT	CC	AA	GG	CT	AA	CT
1._CRU_156	CC	AA	CG	CT	TT	AA	CC	GT	CC	AA	AG	CT	AA	CT
2._CRU_156	CC	AA	CG	CT	TT	AA	CC	GT	CC	AA	AG	CT	AA	CT
3._CRU_156	CC	AA	CG	CT	TT	AA	CC	GT	CC	AA	AG	CT	AA	CT
4._CRU_156	CC	AA	CG	CT	TT	AA	CC	GT	CC	AA	AG	CT	AA	CT
5._CRU_156	CC	AA	CG	CT	TT	AA	CC	GT	CC	AA	AG	CT	AA	CT
6._GC-01-131-7-08	CC	AA	CG	CT	TT	AA	CC	GT	CC	AA	AG	CT	AA	CT
7._GC-01-131-7-08	CC	AA	CG	CT	TT	AA	CC	GT	CC	AA	AG	CT	AA	CT
8._GC-01-131-7-08	CC	AA	CG	CT	TT	AA	CC	GT	CC	AA	AG	CT	AA	CT
9._GC-01-131-7-08	CC	AA	CG	CT	TT	AA	CC	GT	CC	AA	AG	CT	AA	CT
10._GC-01-131-7-08	CC	AA	CG	CT	TT	AA	CC	GT	CC	AA	AG	CT	AA	CT
11._RUQ_880	CC	GG	GG	CC	TT	CC	TT	TT	CC	AA	GG	CC	AG	CC
12._RUQ_880	_	GG	GG	CC	_	_	_	TT	_	_	_	CC	AA	_
13._RUQ_880	_	_	CG	_	_	_	_	GT	_	_	AA	_	AG	_
14._RUQ_880	GG	GG	CC	GG	AA	CC	AA	AA	_	AA	GG	GG	AA	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	GG	CT	CT	CC	GG	AG	AC	GG	GG	CT	AC	AA	GG
1._CRU_156	AA	GG	TT	CC	CC	GG	AG	AC	CC	GT	CC	CC	AA	GG
2._CRU_156	AA	GG	TT	CC	CC	GG	AG	AC	CC	GT	CC	CC	AA	GG
3._CRU_156	AA	GG	TT	CC	CC	GG	AG	AC	CC	GT	CC	CC	AA	GG
4._CRU_156	AA	GG	TT	CC	CC	GG	AG	AC	CC	GT	CC	CC	AA	GG
5._CRU_156	AA	GG	TT	CC	CC	GG	AG	AC	CC	GT	CC	CC	AA	GG
6._GC-01-131-7-08	AA	GG	TT	CC	CC	GG	AG	AC	CC	GT	CC	CC	AA	GG
7._GC-01-131-7-08	AA	GG	TT	CC	CC	GG	AG	AC	CC	GT	CC	CC	AA	GG
8._GC-01-131-7-08	AA	GG	TT	CC	CC	GG	AG	AC	CC	GT	CC	CC	AA	GG
9._GC-01-131-7-08	AA	GG	TT	CC	CC	GG	AG	AC	CC	GT	CC	CC	AA	GG
10._GC-01-131-7-08	AA	GG	TT	CC	CC	GG	AG	AC	CC	GT	CC	CC	AA	GG
11._RUQ_880	AA	GG	CC	CC	GG	GG	AA	CC	CC	GG	CC	AA	AG	GG
12._RUQ_880	_	_	_	CC	GG	GG	_	CC	CC	GG	CC	AA	AG	_
13._RUQ_880	_	_	_	_	GG	GT	AA	CC	CC	_	_	CC	_	_
14._RUQ_880	AA	GG	GG	GG	CC	CC	_	CC	CC	CC	_	AA	_	GG

	29	30	31	32	33	34	35	36	37	38
_Input profile	AA	CT	AA	GG	CC	CT	GT	AC	TT	GG	X_X	X_X	X_X	X_X
1._CRU_156	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X	X_X	X_X
2._CRU_156	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X	X_X	X_X
3._CRU_156	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X	X_X	X_X
4._CRU_156	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X	X_X	X_X
5._CRU_156	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X	X_X	X_X
6._GC-01-131-7-08	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X	X_X	X_X
7._GC-01-131-7-08	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X	X_X	X_X
8._GC-01-131-7-08	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X	X_X	X_X
9._GC-01-131-7-08	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X	X_X	X_X
10._GC-01-131-7-08	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X	X_X	X_X
11._RUQ_880	AA	CC	GG	CC	AA	TT	GT	AA	TT	GG	X_X	X_X	X_X	X_X
12._RUQ_880	AA	CC	GG	CC	AA	TT	TT	AA	_	_	X_X	X_X	X_X	X_X
13._RUQ_880	_	_	AG	_	_	_	_	CC	_	_	X_X	X_X	X_X	X_X
14._RUQ_880	AA	GG	GG	GG	AA	AA	AA	AA	TT	GG	X_X	X_X	X_X	X_X

Input profile: CRU_156

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: CAMPUS 1 A X2 Y1

Dapeng Zhang, 2016

1._CRU_156

77.6 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1708 6

Dapeng Zhang, 2016

2._CRU_156

77.6 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1708 5

Dapeng Zhang, 2016

3._CRU_156

77.6 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1708 3

Dapeng Zhang, 2016

4._CRU_156

77.6 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1708 2

Dapeng Zhang, 2016

5._CRU_156

77.6 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1708 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

6._CRU_156 GC-01-131-7-08

77.6 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

7._CRU_156 GC-01-131-7-08

77.6 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

8._CRU_156 GC-01-131-7-08

77.6 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

9._CRU_156 GC-01-131-7-08

77.6 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

10._CRU_156 GC-01-131-7-08

77.6 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

11._CRU_156 RUQ_880

60.5 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

12._CRU_156 RUQ_880

50 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

13._CRU_156 RUQ_880

45.8 %
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

14._CRU_156 RUQ_880

41.2 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP591	23	TcSNP577	24	TcSNP560	25	TcSNP534
26	TcSNP529	27	TcSNP469	28	TcSNP429	29	TcSNP372	30	TcSNP242
31	TcSNP230	32	TcSNP226	33	TcSNP193	34	TcSNP151	35	TcSNP150
36	TcSNP144	37	TcSNP32	38	TcSNP25